RowSharelist_Azenta_NGS_Citations

	Year	Organism	NGS Service	Institution	Country	Title	Link to Article
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1	2021	Bacteria: Corynebacterium glutamicum and Bacillus subtilis	Custom Short-Read Amplicon Sequencing	National Technology Innovation Center of Synthetic Biology	Asia: China	In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing	https://doi.org/10.1038/s41467-021-21003-y
2	2021	Animal: Asian citrus psyllid, Beet armyworm, Western honey bee	Custom	University of Florida	North America: USA	Streamlined phage display library protocols for identification of insect gut binding peptides highlight peptide specificity	https://doi.org/10.1016/j.cris.2021.100012
3	2020	Mammal: Mouse	Ultra-Low Input RNA-Seq	Université catholique de Louvain	Europe: Belgium	Onecut-dependent Nkx6.2 transcription factor expression is required for proper formation and activity of spinal locomotor circuits	https://doi.org/10.1038/s41598-020-57945-4
4	2020	Plant: Cucurbitaceae	Sequencing Only	Royal Botanic Gardens	Europe: UK	Phylogenetic informativeness analyses to clarify past diversifcation processes in Cucurbitaceae	https://doi.org/10.1038/s41598-019-57249-2
5	2020	Mammal: Mouse	Single-Cell RNA-Seq	Leibniz Institute for Farm Animal Biology	Europe: Germany	Single‐Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	https://doi.org/10.3390/cells9020318
6	2020	Bacteria: Methylobacter	Standard RNA-Seq	University of Washington	North America: USA	A Complex Interplay between Nitric Oxide, Quorum Sensing, and the Unique Secondary Metabolite Tundrenone Constitutes the Hypoxia Response in Methylobacter	https://doi.org/10.1128/mSystems.00770-19
7	2020	Bacteria: Streptococcus pneumoniae	Standard RNA-Seq	University of Louisiana at Lafayette	North America: USA	Electronic Cigarette (E-Cigarette) Vapor Exposure Alters the Streptococcus pneumoniae Transcriptome in a NicotineDependent Manner without Affecting Pneumococcal Virulence	https://doi.org/10.1128/AEM.02125-19
8	2020	Human	Strand-Specific RNA-Seq	University of Texas Southwestern Medical Center	North America: USA	SLC43A3 is a Biomarker of Sensitivity to the Telomeric DNA Damage Mediator 6-Thio-2'-Deoxyguanosine	https://doi.org/10.1158/0008-5472.CAN-19-2257
9	2020	Mammal: Mouse	Standard RNA-Seq	Brown University	North America: USA	Inflammaging is associated with shifted macrophage ontogeny and polarization in the aging mouse ovary	https://doi.org/10.1530/REP-19-0330
10	2020	Plant: Wheat	Standard RNA-Seq	Ben-Gurion University of the Negev	Asia: Israel	Comparative transcriptomic and metabolic analysis of wild and domesticated wheat genotypes reveals differences in chemical and physical defense responses against aphids	https://doi.org/10.1186/s12870-019-2214-z
11	2020	Human	Standard RNA-Seq	Emulate, Inc.	North America: USA	Duodenum Intestine-Chip for preclinical drug assessment in a human relevant model	https://doi.org/10.7554/eLife.50135
12	2020	Synthetic Library	Custom Short-Read Amplicon Sequencing	Vanderbilt University	North America: USA	A systematic evolution of ligands by exponential enrichment workflow with consolidated counterselection to efficiently isolate high-affinity aptamers	https://doi.org/10.1002/eng2.12089
13	2020	Mammal: Cephalopod	Sequencing Only	Florida International University	North America: USA	Population genomics of three deep-sea cephalopod species reveals connectivity between the Gulf of Mexico and northwestern Atlantic Ocean	https://doi.org/10.1016/j.dsr.2020.103222
14	2020	Mammal: Mouse	Standard RNA-Seq	Beth Israel Deaconess Medical Center	North America: USA	Cosmc-dependent mucin-type O-linked glycosylation is essential for podocyte function	https://doi.org/10.1152/ajprenal.00399.2019
15	2020	Human	Standard RNA-Seq	National University of Ireland Galway	Europe: Ireland	A worm gel-based 3D model to elucidate the paracrine interaction between multiple myeloma and mesenchymal stem cells	https://doi.org/10.1016/j.mtbio.2019.100040
16	2020	Bacteria: Enterococcus faecium and Enterobacter cloacae	Sequencing Only	University of Illinois at Chicago	North America: USA	In vitro pharmacodynamic analyses help guide the treatment of multidrug-resistant Enterococcus faecium and carbapenem-resistant Enterobacter cloacae complex bacteremia in a liver transplant patient	https://doi.org/10.1093/ofid/ofz545
17	2020	Microbe: Protists	Custom Short-Read Amplicon Sequencing	Université du Littoral Côte d’Opale	Europe: France	Protist Interactions and Community Structure During Early Autumn in the Kerguelen Region (Southern Ocean)	https://doi.org/10.1016/j.protis.2019.125709
18	2020	Human	Standard RNA-Seq	Vanderbilt University	North America: USA	WDR5 is a conserved regulator of protein synthesis gene expression	https://doi.org/10.1093/nar/gkaa051
19	2020	Animal: Wasp (Nasonia vitripennis)	Standard RNA-Seq	Rowland Institute at Harvard University	North America: USA	Changes in Microbiome Confer Multigenerational Host Resistance after Sub-toxic Pesticide Exposure	https://doi.org/10.1016/j.chom.2020.01.009
20	2020	Human	Amplicon-EZ	Wake Forest University	North America: USA	CRISPR/Cas9 increases mitotic gene conversion in human cells	https://doi.org/10.1038/s41434-020-0126-z
21	2020	Animal: Zebrafish	Amplicon-EZ	The Ohio State University	North America: USA	Quantifying Hematopoietic Stem Cell Clonal Diversity by Selecting Informative Amplicon Barcodes	https://doi.org/10.1038/s41598-020-59119-8
22	2020	Mammal: Mouse	Sequencing Only	Brigham and Women’s Hospital	North America: USA	MAFG-driven astrocytes promote CNS inflammation	https://doi.org/10.1038/s41586-020-1999-0
23	2020	Mammal: Mouse	Standard RNA-Seq	University of Alabama at Birmingham	North America: USA	Mitochondrial Oxidative Phosphorylation Regulates the Fate Decision between Pathogenic Th17 and Regulatory T Cells	https://doi.org/10.1016/j.celrep.2020.01.022
24	2020	Human	Ultra-Low Input RNA-Seq	Columbia University	North America: USA	Tissue Determinants of Human NK Cell Development, Function, and Residence	https://doi.org/10.1016/j.cell.2020.01.022
25	2020	Microbe: Cecropterus lyciades	Standard RNA-Seq	University of Texas Southwestern Medical Center,	North America: USA	A genomic perspective on the taxonomy of the subtribe Carcharodina (Lepidoptera: Hesperiidae: Carcharodini)	10.11646/zootaxa.4748.1.10
26	2020	Mammal: Mouse	Strand-Specific RNA-Seq	Harvard Medical School, Boston Children's Hospital	North America: USA	The physical form of microbial ligands bypasses the need for dendritic cell migration to stimulate adaptive immunity.	https://doi.org/10.1101/2020.03.03.973727
27	2020	Microbe:SARS-CoV-2	RNA-sequencing	Vanderbilt University Medical Centre	North America	The coronavirus proofreading exoribonuclease mediates extensive viral recombination	https://doi.org/10.1101/2020.04.23.057786
28	2020	Human	RNA-sequencing	Fox Chase Cancer Centre	North America:USA	Kinome Profiling of Primary Endometrial Tumors Using Multiplexed Inhibitor Beads and Mass Spectrometry Identifies SRPK1 As Candidate Therapeutic Target	Kinome Profiling of Primary Endometrial Tumors Using Multiplexed Inhibitor Beads and Mass Spectrometry Identifies SRPK1 As Candidate Therapeutic Target
29	2020	Human	Whole exome sequencing	Roche Tissue Diagnostics	North America: USA	Representative Sequencing: Unbiased Sampling of Solid Tumor Tissue	10.1016/j.celrep.2020.107550
30	2020	Human	Single cell sequencing	Fox Chase Cancer Centre	North America:USA	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	10.1016/j.celrep.2020.107782
31	2020	Human	Single cell sequencing	University of Miami Miller School of Medicine	North America: USA	Single-cell resolution analysis of the human pancreatic ductal progenitor cell niche	10.1073/pnas.1918314117
32	2020	Mammal: Mouse	Single cell sequencing	University of Massachusetts - Worceste	North America	Single Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	https://doi.org/10.1101/2020.05.04.077529
33	2019	Mammal: Mouse	Amplicon-EZ	University of Southern California	North America: USA	Comparison of RNA Editing Activity of APOBEC1-A1CF and APOBEC1-RBM47 Complexes Reconstituted in HEK293T Cells	https://www.sciencedirect.com/science/article/pii/S0022283619301032?via%3Dihub
34	2019	Mammal: Mouse	Amplicon-EZ	Mayo Clinic	North America: USA	Ex Vivo Hepatocyte Reprograming Promotes Homology‐Directed DNA Repair to Correct Metabolic Disease in Mice After Transplantation	https://aasldpubs.onlinelibrary.wiley.com/doi/full/10.1002/hep4.1315
35	2019	Animal: Tetranychus urticae	Custom Short-Read Amplicon Sequencing	Universite de Montpellier	Europe: France	A New Prevalent Densovirus Discovered in Acari. Insight from Metagenomics in Viral Communities Associated with Two-Spotted Mite (Tetranychus urticae) Populations	https://www.mdpi.com/1999-4915/11/3/233
36	2019	Human	ChIP-Seq	Harvard Medical School	North America: USA	Environmental Control of Astrocyte Pathogenic Activities in CNS Inflammation	https://www.cell.com/cell/fulltext/S0092-8674(18)31626-X?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS009286741831626X%3Fshowall%3Dtrue
37	2019	Human	ChIP-Seq	Rutgers University	North America: USA	Integrated RNA-seq and ChIP-seq analysis reveals a feed-forward loop regulating H3K9ac and key labor drivers in human placenta	https://www.sciencedirect.com/science/article/abs/pii/S0143400418310750?via%3Dihub
38	2019	Human	Exome Sequencing	Leibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures	Europe: Germany	The LL-100 panel: 100 cell lines for blood cancer studies	https://www.nature.com/articles/s41598-019-44491-x
39	2019	Human	Exome Sequencing	Arizona State University	North America: USA	Exome Sequencing of Two Siblings with Sporadic Autism Spectrum Disorder and Severe Speech Sound Disorder Suggests Pleiotropic and Complex Effects	https://link.springer.com/article/10.1007%2Fs10519-019-09957-8
40	2019	Human	Exome Sequencing	Mount Sinai Medical Center	North America: USA	DPH1 syndrome: two novel variants and structural and functional analyses of seven missense variants identified in syndromic patients	https://www.nature.com/articles/s41431-019-0374-9
41	2019	Human	Exome Sequencing	Weill Cornell Medical College	North America: USA	Revisiting aneuploidy profile of surgically retrieved spermatozoa by whole exome sequencing molecular karyotype	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210079
42	2019	Microbiome: Vaginal microbes of buffalo	16S-EZ	Bharathidasan University	Asia: India	Vaginal microbiome analysis of buffalo (Bubalus bubalis) during estrous cycle using high-throughput amplicon sequence of 16S rRNA gene	https://link.springer.com/article/10.1007%2Fs13199-018-00595-y
43	2019	Mammal: Mouse	Standard RNA-Seq	University of Virginia	North America: USA	Eosinophils downregulate lung alloimmunity by decreasing TCR signal transduction	https://insight.jci.org/articles/view/128241
44	2019	Human	Standard RNA-Seq	University of Copenhagen	Europe: Denmark	Mesenchymal stromal cell activation by breast cancer secretomes in bioengineered 3D microenvironments	https://www.life-science-alliance.org/content/2/3/e201900304
45	2019	Fungi: Nosema ceranae	Standard RNA-Seq	Barnard College	North America: USA	Transcriptional Response to Heat Shock Impacting Diverse Cellular Processes despite Lack of Heat Shock Factor in Microsporidia	https://msphere.asm.org/content/4/3/e00219-19
46	2019	Fungi: Penicillium expansum	Standard RNA-Seq	Rutgers University	North America: USA	Volatile 1-octen-3-ol increases patulin production by Penicillium expansum on a patulin-suppressing medium	https://link.springer.com/article/10.1007%2Fs12550-019-00348-w
47	2019	Bacteria: Burkholderia zhejiangensis	Standard RNA-Seq	Universidad Autonoma del Estado de Morelos	North America: Mexico	Transcriptional analysis reveals the metabolic state of Burkholderia zhejiangensis CEIB S4-3 during methyl parathion degradation	https://peerj.com/articles/6822/
48	2019	Bacteria: Salmonella Typhimurium	Standard RNA-Seq	University of Texas Health Science Center at Houston	North America: USA	Optimal translational fidelity is critical for Salmonella virulence and host interactions	https://academic.oup.com/nar/article/47/10/5356/5426473
49	2019	Human	Standard RNA-Seq	Weill Cornell Medical College	North America: USA	Genetic and epigenetic profiling of the infertile male	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214275
50	2019	Microorganism: Microbes of intestine	Standard RNA-Seq	Institut Pasteur Paris	Europe: France	A Weaning Reaction to Microbiota Is Required for Resistance to Immunopathologies in the Adult	https://www.cell.com/immunity/fulltext/S1074-7613(19)30081-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1074761319300810%3Fshowall%3Dtrue
51	2019	Mammal: Mouse	Standard RNA-Seq	Georgetown University	North America: USA	Parental obesity programs pancreatic cancer development in offspring	https://erc.bioscientifica.com/view/journals/erc/26/5/ERC-19-0016.xml
52	2019	Human	Standard RNA-Seq	Vanderbilt University	North America: USA	Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity	https://www.cell.com/cell-reports/fulltext/S2211-1247(19)30218-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124719302189%3Fshowall%3Dtrue
53	2019	Animal: Drosophila	Standard RNA-Seq	Linkoping University	Europe: Sweden	Branching gene regulatory network dictating different aspects of a neuronal cell identity	https://dev.biologists.org/content/146/6/dev174300
54	2019	Microorganism: Phytophthora infestans	Small RNA-Seq	Institute for Sustainable Plant Protection	Europe: Italy	Tobacco mosaic virus infection triggers an RNAi-based response in Phytophthora infestans	https://www.ncbi.nlm.nih.gov/pubmed/30804453
55	2019	Virus: Rift Valley fever virus	Standard RNA-Seq	MCI Sante Animale	Africa: Morocco	Safety and immunogenicity of a live attenuated Rift Valley Fever recombinant arMP-12DNSm21/384 vaccine candidate for sheep, goats and calves	https://www.sciencedirect.com/science/article/pii/S0264410X19301525?via%3Dihub
56	2019	Plant: Moringa oleifera	Standard RNA-Seq	Rutgers University	North America: USA	Moringa Isothiocyanate Activates Nrf2: Potential Role in Diabetic Nephropathy	https://link.springer.com/article/10.1208%2Fs12248-019-0301-6
57	2019	Plant: Chrysogonum virginianum	Standard RNA-Seq	University of Tennessee - Knoxville	North America: USA	Development and Characterization of Genic Microsatellites for the Ornamental Plant Green and Gold (Chrysogonum virginianum)	https://journals.ashs.org/hortsci/abstract/journals/hortsci/54/2/article-p395.xml
58	2019	Animal: Drosophila suzukii	Standard RNA-Seq	IASMA Research and Innovation Center	Europe: Italy	Functional transcriptome analyses of Drosophila suzukii antennae reveal mating-dependent olfaction plasticity in females	https://www.sciencedirect.com/science/article/pii/S096517481830359X?via%3Dihub
59	2019	Bacteria: Methylomonas sp.	Standard RNA-Seq	University of Washington	North America: USA	Interspecies chemical signaling in a methane-oxidizing bacterial community	https://aem.asm.org/content/85/7/e02702-18
60	2019	Human	Standard RNA-Seq	The Scripps Research Institute	North America: USA	Modeling the Function of TATA Box Binding Protein in Transcriptional Changes Induced by HIV-1 Tat in Innate Immune Cells and the Effect of Methamphetamine Exposure	https://www.frontiersin.org/articles/10.3389/fimmu.2018.03110/full
61	2019	Plant: Nicotiana tabacum	Standard RNA-Seq	USDA - WV	North America: USA	Exposure in vitro to an Environmentally Isolated Strain TC09 of Cladosporium sphaerospermum Triggers Plant Growth Promotion, Early Flowering, and Fruit Yield Increase	https://www.frontiersin.org/articles/10.3389/fpls.2018.01959/full
62	2019	Human	Sequencing Only	University of Southern California	North America: USA	Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance	https://www.nature.com/articles/s41467-019-09634-8
63	2019	Animal: Hesperiidae: Pyrrhopyginae	Sequencing Only	University of Texas - Southwestern Medical Center	North America: USA	Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae)	https://royalsocietypublishing.org/doi/10.1098/rspb.2019.0609
64	2019	Animal: Lacertid Lizards	Sequencing Only	CIBIO/UP	Europe: Portugal	DNA metabarcoding to assess diet partitioning and feeding strategies in generalist vertebrate predators: a case study on three syntopic lacertid lizards from Morocco	https://academic.oup.com/biolinnean/advance-article-abstract/doi/10.1093/biolinnean/blz061/5492636?redirectedFrom=fulltext
65	2019	Animal: Lacertid Lizards	Sequencing Only	George Washington University	North America: USA	Programmed knockout mutation of liver fluke granulin attenuates virulence of infection-induced hepatobiliary morbidity	https://elifesciences.org/articles/41463
66	2019	Human	Whole Genome Sequencing	Cornell University	North America: USA	Next-Generation Sequencing Enables Spatiotemporal Resolution of Human Centromere Replication Timing	https://www.mdpi.com/2073-4425/10/4/269
67	2019	Human	Whole Genome Sequencing	Weill Cornell Medical College	North America: USA	Genetic and epigenetic profiling of the infertile male	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214275
68	2019	Mammal: Rhodesian Ridgeback dog	Whole Genome Sequencing	University of Minnesota	North America: USA	A QIL1 Variant Associated with Ventricular Arrhythmias and Sudden Cardiac Death in the Juvenile Rhodesian Ridgeback Dog	https://www.mdpi.com/2073-4425/10/2/168
69	2019	Mammal: Welsh Springer Spaniels	Whole Genome Sequencing	NCSU College of Veterinary Medicine	North America: USA	The R9H phospholamban mutation is associated with highly penetrant dilated cardiomyopathy and sudden death in a spontaneous canine model	https://www.sciencedirect.com/science/article/pii/S0378111919301477?via%3Dihub
70	2019	Bacteria: Stenotrophomonas maltophilia	Whole Genome Sequencing	University of Houston	North America: USA	Genome data of Stenotrophomonas maltophilia DF07 collected from polluted river sediment reveals an opportunistic pathogen and a potential antibiotic reservoir	https://www.sciencedirect.com/science/article/pii/S2352340919304913?via%3Dihub
71	2019	Human	Sequencing Only	University of Pittsburgh	North America: USA	An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication	https://www.pnas.org/content/116/27/13374
72	2019	Fungi: Aspergillus flavus	Whole Genome Sequencing	Rutgers University	North America: USA	Aspergillus flavus NRRL 35739, a Poor Biocontrol Agent, May Have Increased Relative Expression of Stress Response Genes	https://www.mdpi.com/2309-608X/5/2/53
73	2019	Plant: Tomato and Nicotiana benthamiana	Standard RNA-Seq	University of Cambridge	Europe: UK	Glycerol‐3‐phosphate acyltransferase 6 controls filamentous pathogen interactions and cell wall properties of the tomato and Nicotiana benthamiana leaf epidermis	https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.15846
74	2019	Human	Standard RNA-Seq	Amgen Inc.	North America: USA	LILRB1 Blockade Enhances Bispecific T Cell Engager Antibody–Induced Tumor Cell Killing by Effector CD8+ T Cells	https://www.jimmunol.org/content/early/2019/06/27/jimmunol.1801472
75	2019	Mammal: Mouse	Amplicon-EZ	Klogene Therapeutics	North America: USA	Klotho Is Neuroprotective in the Superoxide Dismutase (SOD1G93A) Mouse Model of ALS	https://link.springer.com/article/10.1007%2Fs12031-019-01356-2
76	2019	Mammal: Mouse	Sequencing Only	Icahn School of Medicine at Mount Sinai	North America: USA	Polycomb Repressive Complex 1 Controls Maintenance of Fungiform Papillae by Repressing Sonic Hedgehog Expression	https://www.sciencedirect.com/science/article/pii/S2211124719307697
77	2019	Mammal: Mouse	Whole Genome Sequencing	Brown University	North America: USA	Dysfunctional MDR-1 disrupts mitochondrial homeostasis in the oocyte and ovary	https://www.nature.com/articles/s41598-019-46025-x
78	2019	Animal: Hesperiidae	Sequencing Only	University of Texas	North America: USA	Three new subfamilies of skipper butterflies (Lepidoptera, Hesperiidae)	https://zookeys.pensoft.net/article/34686/
79	2019	Plant: Prunus persica (peach)	Standard RNA-Seq	University of Maryland - College Park	North America: USA	Translatome profiling of plum pox virus infected leaves in European plum reveals temporal and spatial coordination of defense responses in phloem tissues	https://doi.org/10.1094/MPMI-06-19-0152-FI
80	2019	Mammal: Mouse	Standard RNA-Seq	University of North Carolina at Chapel Hill	North America: USA	Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases	https://doi.org/10.1016/j.chembiol.2019.07.004
81	2019	Mammal: Zebrafish	Ultra-Low Input RNA-Seq	University of Maryland School of Medicine	North America: USA	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response	https://dx.doi.org/10.1038%2Fs41467-019-10967-7
82	2019	Microorganism: E. coli	Whole Genome Sequencing	Stony Brook University	North America: USA	The small molecule nitazoxanide selectively disrupts BAM-mediated folding of the outer membrane usher protein	https://doi.org/10.1074/jbc.RA119.009616
83	2019	Fungi: Puccinia striiformis	Standard RNA-Seq	John Innes Centre	Europe: UK	MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens	https://doi.org/10.1186/s12915-019-0684-y
84	2019	Animal: Pacific white shrimp (Litopenaeus vannamei)	Standard RNA-Seq	Centro de Investigaciones Biológicas del Noroeste	North America: Mexico	Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticus	https://doi.org/10.1371/journal.pone.0220993
85	2019	Mammal: Mouse	Sequencing Only	Icahn School of Medicine at Mount Sinai	North America: USA	Stress resilience is promoted by a Zfp189-driven transcriptional network in prefrontal cortex	https://doi.org/10.1038/s41593-019-0462-8
86	2019	Mammal: Tasmanian devil	Whole Genome Sequencing	Washington State University	North America: USA	Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian Devils	https://doi.org/10.1093/molbev/msz191
87	2019	Animal: Danio rerio (zebrafish)	Ultra-Low Input RNA-Seq	North Carolina State University	North America: USA	Circulating tumor cells exit circulation while maintaining multicellularity augmenting metastatic potential	https://doi.org/10.1242/jcs.231563
88	2019	Animal: C. elegans	Standard RNA-Seq	MRC London Institute of Medical Sciences	Europe: UK	Host-Microbe-Drug-Nutrient Screen Identifies Bacterial Effectors of Metformin Therapy	https://doi.org/10.1016/j.cell.2019.08.003
89	2019	Virus: African streak viruses	Custom Short-Read Amplicon Sequencing	CIRAD, UMR PVBMT	Europe: France	Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach	https://doi.org/10.1038/s41598-019-49134-9
90	2019	Human	Standard RNA-Seq	Johns Hopkins Medical Institutions	North America: USA	Spleen tyrosine kinase activity regulates epidermal growth factor receptor signaling pathway in ovarian cancer	https://doi.org/10.1016/j.ebiom.2019.08.055
91	2019	Animal: Drosophila	Standard RNA-Seq	Brown University	North America: USA	Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks	https://doi.org/10.1186/s12864-019-6061-y
92	2019	Mammal: Rat	Standard RNA-Seq	University of Virginia	North America: USA	Genome-Scale Characterization of Toxicity-Induced Metabolic Alterations in Primary Hepatocytes	https://doi.org/10.1093/toxsci/kfz197
93	2019	Mammal: Mouse	Whole Genome Sequencing	Brown University	North America: USA	Manganese transporter Slc30a10 controls physiological manganese excretion and toxicity	https://doi.org/10.1172/JCI129710
94	2019	Animal: Zebrafish	Sequencing Only	Kanazawa University	Asia: Japan	Enrichment of hematopoietic stem/progenitor cells in the zebrafish kidney	https://doi.org/10.1038/s41598-019-50672-5
95	2019	Mammal: Mouse	Whole Genome Sequencing	Tomsk National Research Medical Center Russian Academy of Sciences	Asia: Russia	Time origin and structural analysis of the induced CRISPR/cas9 megabase-sized deletions and duplications involving the Cntn6 gene in mice	https://doi.org/10.1038/s41598-019-50649-4
96	2019	Fungi: Candida albicans	Sequencing Only	Brown University	North America: USA	A ‘parameiosis’ drives depolyploidization and homologous recombination in Candida albicans	https://doi.org/10.1038/s41467-019-12376-2
97	2019	Mammal: Mouse	Amplicon-EZ	Memorial Sloan Kettering Cancer Center	North America: USA	α-Ketoglutarate links p53 to cell fate during tumour suppression	https://doi.org/10.1038/s41586-019-1577-5
98	2019	Human	Standard RNA-Seq & Amplicon-EZ	The Jackson Laboratory for Genomic Medicine	North America: USA	Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways	https://doi.org/10.1038/s41467-019-12339-7
99	2019	Human	Amplicon-EZ	Centro de Investigaciones Energeticas Medioambientales y Tecnologicas (CIEMAT)	Europe: Spain	NHEJ-Mediated Repair of CRISPR-Cas9-Induced DNA Breaks Efficiently Corrects Mutations in HSPCs from Patients with Fanconi Anemia	https://doi.org/10.1016/j.stem.2019.08.016
100	2019	Mammal: Mouse	Amplicon-EZ	Cedars-Sinai Medical Center	North America: USA	Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements	https://doi.org/10.1016/j.cell.2019.08.013
101	2019	Human	Amplicon-EZ	University of California, San Francisco	North America: USA	Engineering Genetic Predisposition in Human Neuroepithelial Stem Cells Recapitulates Medulloblastoma Tumorigenesis	https://doi.org/10.1016/j.stem.2019.05.013
102	2019	Bacteria: Escherichia coli	Sequencing Only	University of Lethbridge	North America: Canada	Rapid Generation of Sequence-diverse Terminator Libraries and their Parameterization using Quantitative Term-Seq	https://doi.org/10.1093/synbio/ysz026
103	2019	Bacteria: Cellvibrio japonicus	Whole Genome Sequencing	University of Maryland	North America: USA	Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides	https://doi.org/10.1128/MRA.01077-19
104	2019	Mammal: Mouse	Ultra-Low Input RNA-Seq	Weill Cornell Medicine	North America: USA	Tumour exosomal CEMIP protein promotes cancer cell colonization in brain metastasis	https://doi.org/10.1038/s41556-019-0404-4
105	2019	Microbe: Soil microbiome	Sequencing Only	Université de Lorraine, CNRS	Europe: France	DNA stable isotope probing reveals contrasted activity and phenanthrene-degrading bacteria identity in a gradient of anthropized soils	https://doi.org/10.1093/femsec/fiz181
106	2019	Human	Standard RNA-Seq	University of California, San Diego	North America: USA	Joint Location–Specific JAK‐STAT Signaling in Rheumatoid Arthritis Fibroblast‐like Synoviocytes	https://doi.org/10.1002/acr2.11093
107	2019	Mammal: Rat	Sequencing only	Paul Ehrlich Institute	Europe: Germany	Preclinical evaluation of a cell-based gene therapy using the Sleeping Beauty transposon system in choroidal neovascularisation	https://doi.org/10.1016/j.omtm.2019.10.013
108	2019	Human	Standard RNA-Seq	Kings College London	Europe: UK	Synovial IL‐17A+ CD8+ T cells display a polyfunctional, pro‐inflammatory and tissue‐resident memory phenotype and function in psoriatic arthritis	https://doi.org/10.1002/art.41156
109	2019	Microbe: Clinostomum	Whole Genome Sequencing	University of Puerto Rico at Mayagüez	North America: USA	A new species of Clinostomum Leidy, 1856 in East Asia based on genomic and morphological data	https://doi.org/10.1007/s00436-019-06536-y
110	2019	Human	Iso-Seq	Imperial College London	Europe: UK	Epigenetic therapy of myelodysplastic syndromes connects to cellular differentiation independently of endogenous retroelement derepression	https://doi.org/10.1186/s13073-019-0707-x
111	2019	Mammal: Squirrel (Ictidomys tridecemlineatus)	Whole Genome Sequencing	Stanford University	North America: USA	Genetic variation drives seasonal onset of hibernation in the 13-lined ground squirrel	https://doi.org/10.1038/s42003-019-0719-5
112	2019	Animal: Whitefly (Trialeurodes vaporariorum)	Long-Range Phasing (WGS)	University of Exeter	Europe: UK	Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticides	https://doi.org/10.1186/s12864-019-6397-3
113	2019	Plant: Tobacco (Nicotiana benthamiana)	Amplicon-EZ	University of Minnesota	North America: USA	Plant gene editing through de novo induction of meristems	https://doi.org/10.1038/s41587-019-0337-2
114	2019	Bacteria: Staphylococcus epidermidis	Whole Genome Sequencing	University of California, Los Angeles	North America: USA	Evolution of Antibiotic Cross‐Resistance and Collateral Sensitivity in Staphylococcus epidermidis using the Mutant Prevention Concentration and the Mutant Selection Window	https://doi.org/10.1111/eva.12903
115	2019	Plant: Sweet Orange	Standard RNA-Seq	United States Department of Agriculture-Agricultural Research Service	North America: USA	Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight	https://doi.org/10.1186/s12864-019-6339-0
116	2019	Microbe: Gut microbiome	Sequencing Only	University of Tennessee	North America: USA	Evaluation of non‐lethal gut microbiome sampling methods in a passerine bird	https://doi.org/10.1111/ibi.12807
117	2019	Human	Custom Short-Read Amplicon Sequencing	Icahn School of Medicine at Mount Sinai	North America: USA	Neuronal impact of patient-specific aberrant NRXN1α splicing	https://doi.org/10.1038/s41588-019-0539-z
118	2019	Human	Standard RNA-Seq	Queen Mary University of London	Europe: UK	B cell synovitis and clinical phenotypes in rheumatoid arthritis: relationship to disease stages and drug exposure	https://doi.org/10.1002/art.41184
119	2019	Human	Exome Sequencing	School of Medicine at UCLA	North America: USA	Punctiform and Polychromatic Pre-Descemet Corneal Dystrophy: Clinical Evaluation and Identification of the Genetic Basis	https://doi.org/10.1016/j.ajo.2019.11.024
120	2019	Microbe: Gut microbiome	16S-EZ	Los Alamos National Laboratory	North America: USA	Investigating intestinal permeability and gut microbiota roles in acute coronary syndrome patients	https://doi.org/10.1016/j.humic.2019.100059
121	2019	Human	Whole Genome Sequencing	Food and Drug Administration	North America: USA	Targeting specificity of APOBEC-based cytosine base editor in human iPSCs determined by whole genome sequencing	https://doi.org/10.1038/s41467-019-13342-8
122	2019	Mammal: Mouse	Standard RNA-Seq	ntra-Cellular Therapies, Inc.	North America: USA	Inhibition of calcium-calmodulin-dependent phosphodiesterase (PDE1) suppresses inflammatory responses	https://doi.org/10.1016/j.mcn.2019.103449
123	2019	Bacteria: E. coli	Whole Genome Sequencing	Harvard Medical School	North America: USA	Isolating live cells after high-throughput, long-term, time-lapse microscopy	https://doi.org/10.1038/s41592-019-0620-7
124	2019	Mammal: Mouse	Standard RNA-Seq	University of Southern California	North America: USA	Moderate alcohol intake promotes pancreatic ductal adenocarcinoma development in mice expressing oncogenic Kras	https://doi.org/10.1152/ajpgi.00218.2019
125	2019	Human	Standard RNA-Seq	University of Southern California	North America: USA	Grp78 Loss in Epithelial Progenitors Reveals an Age-linked Role for Endoplasmic Reticulum Stress in Pulmonary Fibrosis	https://doi.org/10.1164/rccm.201902-0451OC
126	2019	Virus: Coronavirus	Standard RNA-Seq	Loyola University Chicago	North America: USA	Analysis of Coronavirus Temperature-Sensitive Mutants Reveals an Interplay between the Macrodomain and PapainLike Protease Impacting Replication and Pathogenesis	https://doi.org/10.1128/JVI.02140-18
127	2019	Mammal: Mouse	Single-Cell RNA-Seq	Rutgers University	North America: USA	A reinforcing HNF4–SMAD4 feed-forward module stabilizes enterocyte identity	https://doi.org/10.1038/s41588-019-0384-0
128	2018	Human	Custom Short-Read Amplicon Sequencing	Childrens Hospital Boston	North America: USA	Genome-wide CRISPR screens for Shiga toxins and ricin reveal Golgi proteins critical for glycosylation	https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2006951
129	2018	Microbiome: Soil Microbes	Custom Short-Read Amplicon Sequencing	University of Groningen	Europe: Netherlands	Organic Amendment Under Increasing Agricultural Intensification: Effects on Soil Bacterial Communities and Plant Productivity	https://www.frontiersin.org/articles/10.3389/fmicb.2018.02612/full
130	2018	Plant: Freshwater planktonic protists	Custom Short-Read Amplicon Sequencing	University of Virginia	North America: USA	A meta-barcoding census of freshwater planktonic protists in Appalachia – Natural Tunnel State Park, Virginia, USA	https://mbmg.pensoft.net/articles.php?id=26939
131	2018	Human	ChIP-Seq	Rutgers University	North America: USA	Vitamin D stimulates multiple microRNAs to inhibit CRH and other pro-labor genes in human placenta	https://ec.bioscientifica.com/view/journals/ec/7/12/EC-18-0345.xml
132	2018	Microbiome: Competibacteraceae	Whole Genome Metagenomics	Stanford University	North America: USA	Niche Differentiation among Three Closely Related Competibacteraceae Clades at a Full-Scale Activated Sludge Wastewater Treatment Plant and Putative Linkages to Process Performance	https://aem.asm.org/content/85/5/e02301-18
133	2018	Human	Whole Genome Metagenomics	University of North Carolina	North America: USA	Chromatin remodeling controls Kaposi’s sarcoma-associated herpesvirus reactivation from latency	https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007267
134	2018	Animal: Spodoptera frugiperda	Custom	GlycoBac, LLC	North America: USA	A new approach for detecting adventitious viruses shows Sf-rhabdovirus-negative Sf-RVN cells are suitable for safe biologicals production	https://bmcbiotechnol.biomedcentral.com/articles/10.1186/s12896-017-0412-z
135	2018	Human	Custom	Cancer Institute of New Jersey	North America: USA	MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications	https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2223-1
136	2018	Bacteria: Citrobacter rodentium	Standard RNA-Seq	University of Alberta	North America: Canada	Characterization of the Citrobacter rodentium Cpx regulon and its role in host infection	https://onlinelibrary.wiley.com/doi/abs/10.1111/mmi.14182
137	2018	Mammal: Mouse	Standard RNA-Seq	University of Alabama - Birmingham	North America: USA	Effector CD4 T cells with progenitor potential mediate chronic intestinal inflammation	http://jem.rupress.org/content/215/7/1803
138	2018	Fungi: Saccharomyces cerevisiae	Small RNA-Seq	National Renewable Energy Laboratory	North America: USA	Oleaginicity of the yeast strain Saccharomyces cerevisiae D5A	https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-018-1256-z
139	2018	Plant: Cornus spp.	Standard RNA-Seq	University of Tennessee - Knoxville	North America: USA	Haplotyping of Cornus florida and C. kousa chloroplasts: Insights into species-level differences and patterns of plastic DNA variation in cultivars	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205407
140	2018	Animal: Semibalanus balanoides	Standard RNA-Seq	Brown University	North America: USA	Population Genomics and Biogeography of the Northern Acorn Barnacle (Semibalanus balanoides) Using Pooled Sequencing Approaches	http://www.jbc.org/chttps://link.springer.com/chapter/10.1007%2F13836_2018_58ontent/293/10/3849
141	2018	Bacteria: Cellvibrio japonicus	Standard RNA-Seq	University of Maryland - Baltimore County	North America: USA	Systems analysis of the glycoside hydrolase family 18 enzymes from Cellvibrio japonicus characterizes essential chitin degradation functions	http://www.jbc.org/content/293/10/3849
142	2018	Human	Standard RNA-Seq	National Institute of Health	North America: USA	Abnormal RNA splicing and genomic instability after induction of DNMT3A mutations by CRISPR/Cas9 gene editing	https://www.sciencedirect.com/science/article/abs/pii/S1079979617303881?via%3Dihub
143	2018	Mammal: Mouse	Standard RNA-Seq	University of Virginia	North America: USA	Protein tyrosine kinase 7 regulates extracellular matrix integrity and mesenchymal intracellular RAC1 and myosin II activities during Wolffian duct morphogenesis	https://www.sciencedirect.com/science/article/pii/S0012160618300447?via%3Dihub
144	2018	Mammal: Mouse	Standard RNA-Seq	University of Tennessee Health Science Center	North America: USA	Consequences of Cre-mediated deletion of Ciz1 exon 5 in mice	https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.13221
145	2018	Animal: Oncorhynchus mykiss	Standard RNA-Seq	NCCCWA-ARS-USDA	North America: USA	Differential expression and evolution of three tandem, interleukin-1 receptor-like 1 genes in rainbow trout (Oncorhynchus mykiss)	https://www.sciencedirect.com/science/article/pii/S0145305X18301198?via%3Dihub
146	2018	Animal: Danio rerio (zebrafish)	Standard RNA-Seq	Texas State University	North America: USA	Fluorescent light exposure incites acute and prolonged immune responses in zebrafish (Danio rerio) skin	https://www.sciencedirect.com/science/article/pii/S1532045617301643?via%3Dihub
147	2018	Human	Standard RNA-Seq	Childrens Hospital Philadelphia	North America: USA	Aberrant splicing in B-cell acute lymphoblastic leukemia	https://academic.oup.com/nar/article/46/21/11357/5144135
148	2018	Human	Standard RNA-Seq	Medimmune	North America: USA	Pharmacodynamic biomarkers and differential effects of TNF- and GM-CSF-targeting biologics in rheumatoid arthritis	https://onlinelibrary.wiley.com/doi/full/10.1111/1756-185X.13395
149	2018	Mammal: Mouse	Standard RNA-Seq	Virginia Tech	North America: USA	Von Hippel-Lindau mutations disrupt vascular patterning and maturation via Notch	https://insight.jci.org/articles/view/92193
150	2018	Plant: Acyrthosiphon pisum	Standard RNA-Seq	University of Rennes 1	Europe: France	Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants	https://academic.oup.com/gbe/article/10/6/1554/4999395
151	2018	Fungi: Saccharomyces cerevisiae	Standard RNA-Seq	Tufts University	North America: USA	A semi-synthetic regulon enables rapid growth of yeast on xylose	https://www.nature.com/articles/s41467-018-03645-7
152	2018	Animal: Spodoptera frugiperda	Standard RNA-Seq	University of Wyoming	North America: USA	A new approach for detecting adventitious viruses shows Sf-rhabdovirus-negative Sf-RVN cells are suitable for safe biologicals production	https://bmcbiotechnol.biomedcentral.com/articles/10.1186/s12896-017-0412-z
153	2018	Human	Standard RNA-Seq	National Institute of Health	North America: USA	CRISPR/Cas9-mediated ASXL1 mutations in U937 cells disrupt myeloid differentiation	https://www.spandidos-publications.com/10.3892/ijo.2018.4290
154	2018	Plant: Nicotiana benthamiana	Standard RNA-Seq	National Agricultural Research and Innovation Centre	Europe: Hungary	The nonstop decay and the RNA silencing systems operate cooperatively in plants	https://academic.oup.com/nar/article/46/9/4632/4972878
155	2018	Bacteria: Sporosarcina spp.	Sequencing Only	California State University Northridge	North America: USA	Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation	https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4635-8
156	2018	Microbiome: Soil Microbes	Sequencing Only	University of Lorraine	Europe: France	Soil Properties and Multi-Pollution Affect Taxonomic and Functional Bacterial Diversity in a Range of French Soils Displaying an Anthropisation Gradient	https://link.springer.com/article/10.1007%2Fs00248-018-1297-7
157	2018	Microbiome: Gut Microbes	Sequencing Only	University of Tennessee	North America: USA	The Effects of Landscape Urbanization on the Gut Microbiome: An Exploration Into the Gut of Urban and Rural White-Crowned Sparrows	https://www.frontiersin.org/articles/10.3389/fevo.2018.00148/full
158	2018	Animal: Drosophila athabasca	Sequencing Only	Williams College	North America: USA	Rapid sexual and genomic isolation in sympatric Drosophila without reproductive character displacement	https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.3893
159	2018	Animal: Fish	Sequencing Only	Rockefeller University	North America: USA	GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0198717
160	2018	Animal: Gryllus firmus and G. pennsylvanicus	Sequencing Only	Williams College	North America: USA	Mapping reduced introgression loci to the X chromosome of the hybridizing field crickets, Gryllus firmus and G. pennsylvanicus	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0208498
161	2018	Mammal: Mouse	Whole Genome Sequencing	Emory University	North America: USA	Shortening the Half-Life of Cas9 Maintains Its Gene Editing Ability and Reduces Neuronal Toxicity	https://www.cell.com/cell-reports/fulltext/S2211-1247(18)31765-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124718317650%3Fshowall%3Dtrue
162	2018	Mammal: Cavalier King Charles Spaniels and Dachshund	Whole Genome Sequencing	University of Minnesota	North America: USA	Evaluation of genes associated with human myxomatous mitral valve disease in dogs with familial myxomatous mitral valve degeneration	https://www.sciencedirect.com/science/article/pii/S1090023317302459?via%3Dihub
163	2018	Bacteria: Escherichia coli	Whole Genome Sequencing	UCLA	North America: USA	Synthetic methanol auxotrophy of Escherichia coli for methanol-dependent growth and production	https://www.sciencedirect.com/science/article/pii/S1096717618302659?via%3Dihub
164	2018	Algae: Nitzschia palea	Whole Genome Sequencing	University of Virginia	North America: USA	The complete chloroplast and mitochondrial genomes of the diatom Nitzschia palea (Bacillariophyceae) demonstrate high sequence similarity to the endosymbiont organelles of the dinotom Durinskia baltica	https://onlinelibrary.wiley.com/doi/abs/10.1111/jpy.12824
165	2018	Fungi: Aspergillus oryzae	Whole Genome Sequencing	Pacific Northwest National Laboratories	North America: USA	Draft Genome Sequence of Aspergillus oryzae ATCC 12892	https://mra.asm.org/content/6/18/e00251-18
166	2018	Mammal: American Staffordshire Terriers	Whole Genome Sequencing	University of Minnesota	North America: USA	A de novo mutation in the EXT2 gene associated with osteochondromatosis in a litter of American Staffordshire Terriers	https://onlinelibrary.wiley.com/doi/full/10.1111/jvim.15073
167	2018	Mammal: Doberman Pinscher	Whole Genome Sequencing	University of Minnesota	North America: USA	Deafness and vestibular dysfunction in a Doberman Pinscher puppy associated with a mutation in the PTPRQ gene	https://onlinelibrary.wiley.com/doi/full/10.1111/jvim.15060
168	2018	Bacteria: Organophosphate-degrading rhizobacteria	Whole Genome Sequencing	University of Houston	North America: USA	Whole genome analysis of six organophosphate-degrading rhizobacteria reveals putative agrochemical degradation enzymes with broad substrate specificity	https://link.springer.com/article/10.1007%2Fs11356-018-1435-2
169	2018	Mammal: Sarcophilus harrisii	Whole Genome Sequencing	Washington State University	North America: USA	The Genomic Basis of Tumor Regression in Tasmanian Devils (Sarcophilus harrisii)	https://academic.oup.com/gbe/article/10/11/3012/5129084
170	2017	Mammal: Mouse	Standard RNA-Seq	University of Alabama	North America: USA	Dynamic regulation of T follicular regulatory cell responses by interleukin 2 during influenza infection	https://www.nature.com/articles/ni.3837
171	2017	Bacteria: Methylomicrobium buryatense	Standard RNA-Seq	University of Washington	North America: USA	Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C	https://peerj.com/articles/3945/
172	2017	Mammal: Mouse	Whole Genome Sequencing	Medical College of Wisconsin	North America: USA	Modulators of Enterococcus faecalis Cell Envelope Integrity and Antimicrobial Resistance Influence Stable Colonization of the Mammalian Gastrointestinal Tract	https://iai.asm.org/content/86/1/e00381-17
173	2017	Bacteria: Microbacterium sp.	Whole Genome Sequencing	University of Houston	North America: USA	Whole genome sequencing of Microbacterium sp. AISO3 from polluted San Jacinto River sediment reveals high bacterial mobility, metabolic versatility and heavy metal resistance	https://www.sciencedirect.com/science/article/pii/S2213596017301253?via%3Dihub
174	2017	Bacteria: Pseudomonas nitroreducensDF05	Whole Genome Sequencing	University of Houston	North America: USA	Genome of Pseudomonas nitroreducensDF05 from dioxin contaminated sediment downstream of the San Jacinto River waste pits reveals a broad array of aromatic degradation gene determinants	https://www.sciencedirect.com/science/article/pii/S2213596017301290?via%3Dihub